How to add sqlite3 dependency to VS Code extension?

I am trying to make extension in Typescript for VS Code using sqlite3 library.

I have project.json like this:

"dependencies": {
    "sqlite3": "^4.0.2"
},
"devDependencies": {
    "@types/mocha": "^2.2.42",
    "@types/node": "^7.0.43",
    "@types/sqlite3": "^3.1.3",
    "tslint": "^5.8.0",
    "typescript": "^2.6.1",
    "vscode": "^1.1.6"
}

after installing dependency Typescript can import sqlite3 happily (intellisense does not mind) but after running extension I will get following error:

Error: Cannot find module 'C:\projekty\MyFirstCodeExt\sqlite-starter\node_modules\sqlite3\lib\binding\node-v54-win32-x64\node_sqlite3.node'

I guess it is related to electron rebuild but I cannot figure how to proceed.

UPDATE: I checked the path:

\node_modules\sqlite3\lib\binding\node-v54-win32-x64\node_sqlite3.node'

but found instead:

\node_modules\sqlite3\lib\binding\node-v59-win32-x64\node_sqlite3.node'

I dont know how to fix it.